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DVU_2084 DVU_2084 DVU_2461 DVU_2461 DVU_2462 DVU_2462 DVU_0168 DVU_0168 DVU_0167 DVU_0167 DVU_2576 DVU_2576 DVU_0166 DVU_0166 DVU_0165 DVU_0165 DVU_0169 DVU_0169 relA relA DVU_2383 DVU_2383
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2084Oligopeptide-binding protein, putative; Identified by similarity to SP:P42061; match to protein family HMM PF00496. (565 aa)    
Predicted Functional Partners:
DVU_2461
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.
 0.997
DVU_2462
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
 0.995
DVU_0168
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.987
DVU_0167
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.986
DVU_2576
Oligopeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42064; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.980
DVU_0166
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.975
DVU_0165
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.972
DVU_0169
Oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein; Identified by match to protein family HMM PF00496.
  
  
 
0.909
relA
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
     
 0.813
DVU_2383
tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593.
 
   
 0.667
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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