Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0643 | DVU_2092 | DVU_0643 | DVU_2092 | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | Identified by match to protein family HMM PF00899. | 0.927 |
| DVU_0643 | ThiH | DVU_0643 | DVU_1765 | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | thiH protein, putative; Identified by similarity to SP:P30140; match to protein family HMM PF04055. | 0.503 |
| DVU_0643 | thiC | DVU_0643 | DVU_1411 | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | Thiamine biosynthesis protein ThiC; Identified by match to protein family HMM PF01964; match to protein family HMM TIGR00190. | 0.710 |
| DVU_0643 | thiD | DVU_0643 | DVU_0931 | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | Phosphomethylpyrimidine kinase; Identified by match to protein family HMM TIGR00097. | 0.666 |
| DVU_0643 | thiE-1 | DVU_0643 | DVU_2091 | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). | 0.601 |
| DVU_0643 | thiE-2 | DVU_0643 | DVU_2362 | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.601 |
| DVU_0643 | thiG | DVU_0643 | DVU_2094 | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | thiG protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S; Belongs to the ThiG family. | 0.890 |
| DVU_0643 | thiH | DVU_0643 | DVU_2093 | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | thiH protein; Identified by similarity to SP:P30140; match to protein family HMM PF04055. | 0.562 |
| DVU_0643 | thiS | DVU_0643 | DVU_2095 | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683. | 0.990 |
| DVU_2092 | DVU_0643 | DVU_2092 | DVU_0643 | Identified by match to protein family HMM PF00899. | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | 0.927 |
| DVU_2092 | ThiH | DVU_2092 | DVU_1765 | Identified by match to protein family HMM PF00899. | thiH protein, putative; Identified by similarity to SP:P30140; match to protein family HMM PF04055. | 0.515 |
| DVU_2092 | thiC | DVU_2092 | DVU_1411 | Identified by match to protein family HMM PF00899. | Thiamine biosynthesis protein ThiC; Identified by match to protein family HMM PF01964; match to protein family HMM TIGR00190. | 0.719 |
| DVU_2092 | thiD | DVU_2092 | DVU_0931 | Identified by match to protein family HMM PF00899. | Phosphomethylpyrimidine kinase; Identified by match to protein family HMM TIGR00097. | 0.666 |
| DVU_2092 | thiE-1 | DVU_2092 | DVU_2091 | Identified by match to protein family HMM PF00899. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). | 0.937 |
| DVU_2092 | thiE-2 | DVU_2092 | DVU_2362 | Identified by match to protein family HMM PF00899. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.678 |
| DVU_2092 | thiG | DVU_2092 | DVU_2094 | Identified by match to protein family HMM PF00899. | thiG protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S; Belongs to the ThiG family. | 0.989 |
| DVU_2092 | thiH | DVU_2092 | DVU_2093 | Identified by match to protein family HMM PF00899. | thiH protein; Identified by similarity to SP:P30140; match to protein family HMM PF04055. | 0.953 |
| DVU_2092 | thiS | DVU_2092 | DVU_2095 | Identified by match to protein family HMM PF00899. | Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683. | 0.998 |
| DVU_3241 | thiS | DVU_3241 | DVU_2095 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP0990; match to protein family HMM PF01171. | Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683. | 0.629 |
| ThiH | DVU_0643 | DVU_1765 | DVU_0643 | thiH protein, putative; Identified by similarity to SP:P30140; match to protein family HMM PF04055. | thiF protein, putative; Identified by similarity to SP:P30138; match to protein family HMM PF00899. | 0.503 |
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