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DVU_2099 DVU_2099 cooS cooS DVU_0366 DVU_0366 DVU_2097 DVU_2097 DVU_0908 DVU_0908 DVU_0365 DVU_0365 DVU_1585 DVU_1585 dnaB dnaB lys1 lys1 DVU_0671 DVU_0671 DVU_2767 DVU_2767
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2099Carbon monoxide dehydrogenase accessory protein CooC, putative; Identified by similarity to SP:P31897; match to protein family HMM PF00991. (293 aa)    
Predicted Functional Partners:
cooS
Carbon monoxide dehydrogenase; Identified by similarity to SP:P31896.
 
   
 0.920
DVU_0366
Identified by match to protein family HMM PF01812; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
     
 0.739
DVU_2097
Transcriptional regulator, putative; Identified by similarity to SP:P03019; match to protein family HMM PF00027.
 
   
 0.686
DVU_0908
Iron-sulfur cluster-binding protein, putative.
 
  
 0.616
DVU_0365
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS1629; match to protein family HMM PF02578.
   
  
 0.565
DVU_1585
Vitamin B12-dependent methionine synthase family protein; Identified by similarity to SP:P37586; match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.
     
 0.485
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
   
 0.458
lys1
Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435.
      
 0.443
DVU_0671
Conserved hypothetical protein; Identified by similarity to OMNI:TM1058.
  
     0.424
DVU_2767
Iron-sulfur flavoprotein, putative.
  
   
 0.400
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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