STRINGSTRING
DVU_2125 DVU_2125 htpG htpG DVU_2124 DVU_2124 alaS alaS dnaK dnaK glnB-1 glnB-1 DVU_2118 DVU_2118 rpoA rpoA DVU_2123 DVU_2123 DVU_2119 DVU_2119 DVU_2628 DVU_2628
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2125TPR domain protein; Identified by match to protein family HMM PF00515. (371 aa)    
Predicted Functional Partners:
htpG
Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family.
  
 0.786
DVU_2124
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00146.
 
  
 0.766
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.761
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.760
glnB-1
Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family.
    
 
 0.721
DVU_2118
Conserved hypothetical protein; Identified by similarity to OMNI:CT0429.
 
    0.718
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.690
DVU_2123
Membrane protein, putative; Identified by similarity to OMNI:NTL01RS0651.
 
    0.688
DVU_2119
Type II/III secretion system protein; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.
 
    0.684
DVU_2628
TPR domain protein; Identified by match to protein family HMM PF00515.
  
    0.682
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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