STRINGSTRING
DVU_2161 DVU_2161 DVU_2159 DVU_2159 DVU_2160 DVU_2160 DVU_2162 DVU_2162 DVU_2158 DVU_2158 DVU_2164 DVU_2164 DVU_2163 DVU_2163 DVU_2165 DVU_2165 DVU_2157 DVU_2157 DVU_2166 DVU_2166 DVU_2156 DVU_2156
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2161Hypothetical protein; Identified by Glimmer2; putative. (236 aa)    
Predicted Functional Partners:
DVU_2159
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.813
DVU_2160
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.785
DVU_2162
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.778
DVU_2158
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.745
DVU_2164
Lipoprotein, putative.
  
    0.730
DVU_2163
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.723
DVU_2165
Lysozyme, putative; Identified by match to protein family HMM PF01464.
  
    0.638
DVU_2157
Tail tape meausure protein, putative.
  
    0.464
DVU_2166
Holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
  
    0.461
DVU_2156
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.415
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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