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DVU_2172 DVU_2172 DVU_2171 DVU_2171 DVU_2170 DVU_2170 DVU_2169 DVU_2169 DVU_2168 DVU_2168 DVU_2167 DVU_2167 DVU_2173 DVU_2173 DVU_2166 DVU_2166 DVU_2165 DVU_2165
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_2172Hypothetical protein; Identified by Glimmer2; putative. (73 aa)    
Predicted Functional Partners:
DVU_2171
Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
  
    0.794
DVU_2170
Identified by match to protein family HMM PF01343.
  
    0.784
DVU_2169
Conserved hypothetical protein; Identified by similarity to GP:311850.
  
    0.758
DVU_2168
Major head protein; Identified by match to protein family HMM PF03864.
  
    0.746
DVU_2167
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.742
DVU_2173
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.582
DVU_2166
Holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
  
    0.507
DVU_2165
Lysozyme, putative; Identified by match to protein family HMM PF01464.
  
    0.461
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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