STRINGSTRING
DVU_2210 DVU_2210 DVU_2209 DVU_2209 DVU_0126 DVU_0126 htpG htpG dnaK dnaK DVU_0742 DVU_0742 DVU_0400 DVU_0400 alaS alaS DVU_1460 DVU_1460 DVU_0245 DVU_0245 glnB-1 glnB-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2210TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702. (575 aa)    
Predicted Functional Partners:
DVU_2209
Conserved hypothetical protein; Identified by similarity to GP:18252514.
 
   0.889
DVU_0126
ABC transporter, ATP-binding protein; Identified by similarity to SP:P37624; match to protein family HMM PF00005.
  
 
 0.824
htpG
Heat shock protein HtpG; Molecular chaperone. Has ATPase activity; Belongs to the heat shock protein 90 family.
  
 0.786
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.780
DVU_0742
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.777
DVU_0400
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.772
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.771
DVU_1460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.768
DVU_0245
Protein phosphatase, putative; Identified by match to protein family HMM PF00782.
 
 
 0.743
glnB-1
Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family.
    
 
 0.721
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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