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DVU_2223 DVU_2223 DVU_2224 DVU_2224 DVU_2225 DVU_2225 ssb ssb DVU_2226 DVU_2226 DVU_2227 DVU_2227 motA-2 motA-2 DVU_2228 DVU_2228 deoD deoD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2223Hypothetical protein; Identified by Glimmer2; putative. (114 aa)    
Predicted Functional Partners:
DVU_2224
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.803
DVU_2225
acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit.
  
    0.786
ssb
Single-strand binding protein; Identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621.
  
    0.744
DVU_2226
acetyl-CoA carboxylase, biotin carboxylase, putative; Identified by match to protein family HMM PF00289; match to protein family HMM PF02786.
  
    0.610
DVU_2227
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.571
motA-2
Chemotaxis protein MotA; Identified by similarity to SP:P28611; match to protein family HMM PF01618.
  
    0.546
DVU_2228
motB protein, putative; Identified by similarity to GP:4426946; match to protein family HMM PF00691.
       0.537
deoD
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
    0.436
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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