STRINGSTRING
DVU_2227 DVU_2227 DVU_2226 DVU_2226 motA-2 motA-2 DVU_2228 DVU_2228 pcm pcm DVU_2225 DVU_2225 deoD deoD DVU_2223 DVU_2223 DVU_2224 DVU_2224 ssb ssb
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2227Hypothetical protein; Identified by Glimmer2; putative. (147 aa)    
Predicted Functional Partners:
DVU_2226
acetyl-CoA carboxylase, biotin carboxylase, putative; Identified by match to protein family HMM PF00289; match to protein family HMM PF02786.
  
    0.801
motA-2
Chemotaxis protein MotA; Identified by similarity to SP:P28611; match to protein family HMM PF01618.
  
    0.794
DVU_2228
motB protein, putative; Identified by similarity to GP:4426946; match to protein family HMM PF00691.
  
    0.780
pcm
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
   
    0.767
DVU_2225
acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit.
  
    0.650
deoD
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
    0.593
DVU_2223
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.571
DVU_2224
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.561
ssb
Single-strand binding protein; Identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621.
  
    0.529
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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