Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_2239 | DVU_2240 | DVU_2239 | DVU_2240 | Identified by match to protein family HMM PF00933. | Identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378. | 0.776 |
| DVU_2239 | cobD | DVU_2239 | DVU_2237 | Identified by match to protein family HMM PF00933. | Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | 0.439 |
| DVU_2239 | pdxA | DVU_2239 | DVU_2241 | Identified by match to protein family HMM PF00933. | Pyridoxal phosphate biosynthetic protein PdxA; Identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family. | 0.775 |
| DVU_2239 | trmL | DVU_2239 | DVU_2238 | Identified by match to protein family HMM PF00933. | RNA methyltransferase, TrmH family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. | 0.460 |
| DVU_2240 | DVU_2239 | DVU_2240 | DVU_2239 | Identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378. | Identified by match to protein family HMM PF00933. | 0.776 |
| DVU_2240 | cobD | DVU_2240 | DVU_2237 | Identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378. | Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | 0.434 |
| DVU_2240 | pdxA | DVU_2240 | DVU_2241 | Identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378. | Pyridoxal phosphate biosynthetic protein PdxA; Identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family. | 0.773 |
| DVU_2240 | trmL | DVU_2240 | DVU_2238 | Identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378. | RNA methyltransferase, TrmH family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. | 0.425 |
| cobD | DVU_2239 | DVU_2237 | DVU_2239 | Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | Identified by match to protein family HMM PF00933. | 0.439 |
| cobD | DVU_2240 | DVU_2237 | DVU_2240 | Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | Identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378. | 0.434 |
| cobD | pdxA | DVU_2237 | DVU_2241 | Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | Pyridoxal phosphate biosynthetic protein PdxA; Identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family. | 0.427 |
| cobD | trmL | DVU_2237 | DVU_2238 | Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | RNA methyltransferase, TrmH family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. | 0.790 |
| frr | tig | DVU_0870 | DVU_1334 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.895 |
| frr | trmD | DVU_0870 | DVU_0836 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. | 0.405 |
| frr | trmL | DVU_0870 | DVU_2238 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | RNA methyltransferase, TrmH family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. | 0.467 |
| pdxA | DVU_2239 | DVU_2241 | DVU_2239 | Pyridoxal phosphate biosynthetic protein PdxA; Identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family. | Identified by match to protein family HMM PF00933. | 0.775 |
| pdxA | DVU_2240 | DVU_2241 | DVU_2240 | Pyridoxal phosphate biosynthetic protein PdxA; Identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family. | Identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378. | 0.773 |
| pdxA | cobD | DVU_2241 | DVU_2237 | Pyridoxal phosphate biosynthetic protein PdxA; Identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family. | Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | 0.427 |
| pdxA | trmL | DVU_2241 | DVU_2238 | Pyridoxal phosphate biosynthetic protein PdxA; Identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family. | RNA methyltransferase, TrmH family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. | 0.425 |
| rlmH | rlmN | DVU_1254 | DVU_2904 | Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. | 0.407 |
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