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DVU_2239 DVU_2239 DVU_2240 DVU_2240 pdxA pdxA pepA pepA DVU_0041 DVU_0041 DVU_0517 DVU_0517 trmL trmL murB murB cobD cobD murA murA DVU_2768 DVU_2768
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2239Identified by match to protein family HMM PF00933. (481 aa)    
Predicted Functional Partners:
DVU_2240
Identified by similarity to GP:20516119; match to protein family HMM PF01968; match to protein family HMM PF05378.
  
    0.776
pdxA
Pyridoxal phosphate biosynthetic protein PdxA; Identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family.
  
    0.775
pepA
Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
    
 0.606
DVU_0041
Transglycosylase, SLT family; Identified by similarity to OMNI:SO4017; match to protein family HMM PF01464; match to protein family HMM PF01476.
     
 0.510
DVU_0517
Peptidase, M23/M37 family; Identified by similarity to SP:P75942; match to protein family HMM PF01551.
 
  
 0.502
trmL
RNA methyltransferase, TrmH family; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
  
    0.460
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
  
  
 0.442
cobD
Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
    0.439
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
  
 0.439
DVU_2768
comF family protein; Identified by similarity to SP:P31773.
  
    0.430
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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