STRINGSTRING
DVU_2277 DVU_2277 DVU_2276 DVU_2276 DVU_2278 DVU_2278 DVU_2280 DVU_2280 DVU_0949 DVU_0949 DVU_1382 DVU_1382 DVU_2820 DVU_2820 DVU_3273 DVU_3273 DVU_0359 DVU_0359 DVU_2611 DVU_2611 DVU_2271 DVU_2271
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2277Hypothetical protein; Identified by Glimmer2; putative. (203 aa)    
Predicted Functional Partners:
DVU_2276
Membrane protein, putative; Identified by match to protein family HMM PF01925.
 
    0.823
DVU_2278
Membrane protein, putative; Identified by match to protein family HMM PF00892.
  
    0.615
DVU_2280
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
 
    0.587
DVU_0949
Conserved domain protein; Identified by similarity to OMNI:NMB1475.
  
    0.486
DVU_1382
HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family.
  
     0.486
DVU_2820
Identified by match to protein family HMM PF04909.
  
     0.432
DVU_3273
Conserved hypothetical protein; Identified by similarity to GP:944973.
  
     0.424
DVU_0359
HesB-like domain.
  
    0.423
DVU_2611
Conserved hypothetical protein.
  
    0.422
DVU_2271
Pyruvate formate-lyase activating enzyme, putative; Identified by similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055.
  
  
 0.403
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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