STRINGSTRING
DVU_2278 DVU_2278 DVU_2277 DVU_2277 DVU_2276 DVU_2276 DVU_2280 DVU_2280 DVU_2279 DVU_2279 ribD ribD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2278Membrane protein, putative; Identified by match to protein family HMM PF00892. (283 aa)    
Predicted Functional Partners:
DVU_2277
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.615
DVU_2276
Membrane protein, putative; Identified by match to protein family HMM PF01925.
  
    0.594
DVU_2280
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
 
    0.492
DVU_2279
Hypothetical protein; Identified by Glimmer2; putative.
       0.481
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.420
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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