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DVU_2318 DVU_2318 rdl rdl fur-2 fur-2 DVU_2247 DVU_2247 DVU_0772 DVU_0772 DVU_0024 DVU_0024 rr rr rub rub bfr bfr DVU_2319 DVU_2319 aroA-2 aroA-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2318Rubrerythrin, putative; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915. (164 aa)    
Predicted Functional Partners:
rdl
Identified by match to protein family HMM PF00301; Belongs to the rubredoxin family.
  
  
 0.919
fur-2
Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
  
  
 0.902
DVU_2247
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
  
  
 0.876
DVU_0772
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.848
DVU_0024
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT0251.
  
    0.847
rr
Rubrerythrin; May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide.
  
  
0.796
rub
Rubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
  
  
 0.773
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex.
  
  
 0.633
DVU_2319
Transcriptional regulator domain protein; Identified by match to protein family HMM PF00486.
     
 0.520
aroA-2
Predicted phospho-2-dehydro-3-deoxyheptonate aldolase; Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2-amino-3,7- dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids; Belongs to the DeoC/FbaB aldolase family. ADHS subfamily.
   
    0.507
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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