DVU_2337 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_2337

Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551. (383 aa)

Predicted Functional Partners:

DVU_3374

0.953

DVU_2336

0.881

DVU_1347

0.760

DVU_2335

0.728

DVU_2338

0.724

DVU_1583

0.713

gpm

0.684

DVU_3395

0.680

DVU_1578

0.657

DVU_2763

0.627

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_1347	DVU_1578	DVU_1347	DVU_1578	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	TPR domain protein; Identified by match to protein family HMM PF01435.	0.404
DVU_1347	DVU_2337	DVU_1347	DVU_2337	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.760
DVU_1578	DVU_1347	DVU_1578	DVU_1347	TPR domain protein; Identified by match to protein family HMM PF01435.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.404
DVU_1578	DVU_1583	DVU_1578	DVU_1583	TPR domain protein; Identified by match to protein family HMM PF01435.	TPR domain protein; Identified by match to protein family HMM PF00515.	0.796
DVU_1578	DVU_2337	DVU_1578	DVU_2337	TPR domain protein; Identified by match to protein family HMM PF01435.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.657
DVU_1583	DVU_1578	DVU_1583	DVU_1578	TPR domain protein; Identified by match to protein family HMM PF00515.	TPR domain protein; Identified by match to protein family HMM PF01435.	0.796
DVU_1583	DVU_2336	DVU_1583	DVU_2336	TPR domain protein; Identified by match to protein family HMM PF00515.	Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225.	0.461
DVU_1583	DVU_2337	DVU_1583	DVU_2337	TPR domain protein; Identified by match to protein family HMM PF00515.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.713
DVU_1583	DVU_2763	DVU_1583	DVU_2763	TPR domain protein; Identified by match to protein family HMM PF00515.	TPR/GGDEF domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.701
DVU_2335	DVU_2336	DVU_2335	DVU_2336	Conserved domain protein; Identified by similarity to SP:P37691; match to protein family HMM PF04748.	Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225.	0.611
DVU_2335	DVU_2337	DVU_2335	DVU_2337	Conserved domain protein; Identified by similarity to SP:P37691; match to protein family HMM PF04748.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.728
DVU_2335	DVU_2338	DVU_2335	DVU_2338	Conserved domain protein; Identified by similarity to SP:P37691; match to protein family HMM PF04748.	DNA repair protein, HhH-GPD family; Identified by match to protein family HMM PF00633; match to protein family HMM PF00730.	0.503
DVU_2336	DVU_1583	DVU_2336	DVU_1583	Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225.	TPR domain protein; Identified by match to protein family HMM PF00515.	0.461
DVU_2336	DVU_2335	DVU_2336	DVU_2335	Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225.	Conserved domain protein; Identified by similarity to SP:P37691; match to protein family HMM PF04748.	0.611
DVU_2336	DVU_2337	DVU_2336	DVU_2337	Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.881
DVU_2336	DVU_2338	DVU_2336	DVU_2338	Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225.	DNA repair protein, HhH-GPD family; Identified by match to protein family HMM PF00633; match to protein family HMM PF00730.	0.643
DVU_2336	gpm	DVU_2336	DVU_2935	Carboxyl-terminal protease; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225.	Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	0.495
DVU_2337	DVU_1347	DVU_2337	DVU_1347	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.760
DVU_2337	DVU_1578	DVU_2337	DVU_1578	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	TPR domain protein; Identified by match to protein family HMM PF01435.	0.657
DVU_2337	DVU_1583	DVU_2337	DVU_1583	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	TPR domain protein; Identified by match to protein family HMM PF00515.	0.713

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About