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DVU_2339 DVU_2339 DVU_2340 DVU_2340 DVU_2341 DVU_2341 rplK rplK DVU_1685 DVU_1685 PanF PanF mutS2 mutS2 dnaJ dnaJ DVU_0661 DVU_0661 DVU_1003 DVU_1003 hmcA hmcA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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[Homology]
Score
DVU_2339Ribosomal protein L11 methyltransferase, putative. (283 aa)    
Predicted Functional Partners:
DVU_2340
Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
  
    0.805
DVU_2341
Amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
  
    0.798
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
 
 0.781
DVU_1685
Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
  
  
 0.715
PanF
Sodium/pantothenate symporter; Identified by similarity to SP:P16256; match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02119; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.707
mutS2
MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
 
    0.640
dnaJ
dnaJ protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and Gr [...]
  
  
 0.628
DVU_0661
Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
    
 0.620
DVU_1003
dnaJ domain protein; Identified by match to protein family HMM PF00226.
  
  
 0.618
hmcA
High-molecular-weight cytochrome C; HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates.
  
  
 0.612
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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