DVU_2353 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_2353

Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (602 aa)

Predicted Functional Partners:

DVU_2354

0.819

DVU_2352

0.664

DVU_0697

0.609

DVU_2077

0.489

DVU_3140

0.472

DVU_0117

0.465

DVU_3201

0.445

fliN

0.413

DVU_2059

0.412

DVU_1215

0.402

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0117	DVU_0697	DVU_0117	DVU_0697	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.520
DVU_0117	DVU_2352	DVU_0117	DVU_2352	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.614
DVU_0117	DVU_2353	DVU_0117	DVU_2353	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.465
DVU_0117	DVU_2354	DVU_0117	DVU_2354	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.667
DVU_0697	DVU_0117	DVU_0697	DVU_0117	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.520
DVU_0697	DVU_2059	DVU_0697	DVU_2059	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.609
DVU_0697	DVU_2352	DVU_0697	DVU_2352	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.609
DVU_0697	DVU_2353	DVU_0697	DVU_2353	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.609
DVU_0697	DVU_2354	DVU_0697	DVU_2354	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.615
DVU_0697	DVU_3140	DVU_0697	DVU_3140	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Capsular polysaccharide transport protein, putative; Identified by similarity to GP:2801417; match to protein family HMM PF02563.	0.777
DVU_0697	fliN	DVU_0697	DVU_0046	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Flagellar motor switch protein FliN; Identified by similarity to SP:P15070; match to protein family HMM PF01052.	0.420
DVU_1215	DVU_2352	DVU_1215	DVU_2352	Identified by match to protein family HMM PF01569.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.511
DVU_1215	DVU_2353	DVU_1215	DVU_2353	Identified by match to protein family HMM PF01569.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.402
DVU_2059	DVU_0697	DVU_2059	DVU_0697	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.609
DVU_2059	DVU_2353	DVU_2059	DVU_2353	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.412
DVU_2059	DVU_2354	DVU_2059	DVU_2354	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.753
DVU_2059	fliN	DVU_2059	DVU_0046	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Flagellar motor switch protein FliN; Identified by similarity to SP:P15070; match to protein family HMM PF01052.	0.411
DVU_2077	DVU_2352	DVU_2077	DVU_2352	Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.513
DVU_2077	DVU_2353	DVU_2077	DVU_2353	Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.489
DVU_2077	DVU_3201	DVU_2077	DVU_3201	Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.	Hypothetical protein; Identified by Glimmer2; putative.	0.766

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About