Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0099 | DVU_2383 | DVU_0099 | DVU_2383 | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | 0.867 |
| DVU_0099 | DVU_2389 | DVU_0099 | DVU_2389 | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472. | 0.873 |
| DVU_0099 | DVU_2806 | DVU_0099 | DVU_2806 | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618. | 0.822 |
| DVU_0099 | tolQ-1 | DVU_0099 | DVU_2388 | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618. | 0.821 |
| DVU_0099 | tolQ-2 | DVU_0099 | DVU_3099 | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618. | 0.828 |
| DVU_2383 | DVU_0099 | DVU_2383 | DVU_0099 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.867 |
| DVU_2383 | DVU_2384 | DVU_2383 | DVU_2384 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496. | 0.653 |
| DVU_2383 | DVU_2386 | DVU_2383 | DVU_2386 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.614 |
| DVU_2383 | DVU_2387 | DVU_2383 | DVU_2387 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.612 |
| DVU_2383 | DVU_2389 | DVU_2383 | DVU_2389 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472. | 0.831 |
| DVU_2383 | DVU_2390 | DVU_2383 | DVU_2390 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | TonB domain protein; Identified by similarity to GP:19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352. | 0.953 |
| DVU_2383 | DVU_2806 | DVU_2383 | DVU_2806 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618. | 0.504 |
| DVU_2383 | DVU_3101 | DVU_2383 | DVU_3101 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | tonB protein, putative; Identified by similarity to GP:14595286; match to protein family HMM TIGR01352. | 0.882 |
| DVU_2383 | tolQ-1 | DVU_2383 | DVU_2388 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618. | 0.804 |
| DVU_2383 | tolQ-2 | DVU_2383 | DVU_3099 | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618. | 0.500 |
| DVU_2384 | DVU_2383 | DVU_2384 | DVU_2383 | ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496. | tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593. | 0.653 |
| DVU_2384 | DVU_2386 | DVU_2384 | DVU_2386 | ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.963 |
| DVU_2384 | DVU_2387 | DVU_2384 | DVU_2387 | ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.982 |
| DVU_2384 | DVU_2389 | DVU_2384 | DVU_2389 | ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496. | Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472. | 0.816 |
| DVU_2384 | DVU_2390 | DVU_2384 | DVU_2390 | ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496. | TonB domain protein; Identified by similarity to GP:19577340; match to protein family HMM PF03544; match to protein family HMM TIGR01352. | 0.798 |
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