STRINGSTRING
DVU_2396 DVU_2396 DVU_2905 DVU_2905 DVU_2885 DVU_2885 DVU_2394 DVU_2394 glgA glgA putA putA mraY mraY DVU_1486 DVU_1486 DVU_1389 DVU_1389 DVU_1333 DVU_1333 poR poR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2396Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:P31005; match to protein family HMM PF00465. (380 aa)    
Predicted Functional Partners:
DVU_2905
Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:Q04944; match to protein family HMM PF00465.
  
 
0.931
DVU_2885
Alcohol dehydrogenase, iron-containing; Identified by similarity to GP:155577; match to protein family HMM PF00465.
  
 
 
0.927
DVU_2394
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
  
  
 0.671
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
  
 0.614
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
 
 
 0.600
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
   
  
 0.596
DVU_1486
Tail fiber protein, truncation.
   
  
 0.583
DVU_1389
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.582
DVU_1333
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.580
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
     
 0.554
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.