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DVU_2422 DVU_2422 flr flr DVU_2421 DVU_2421 DVU_0126 DVU_0126 DVU_2145 DVU_2145 birA birA DVU_3079 DVU_3079 DVU_0127 DVU_0127 DVU_2423 DVU_2423 DVU_2210 DVU_2210 fadD fadD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2422Identified by match to protein family HMM PF00881. (169 aa)    
Predicted Functional Partners:
flr
Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613.
 
  
 0.914
DVU_2421
Identified by match to protein family HMM PF01361; Belongs to the 4-oxalocrotonate tautomerase family.
  
    0.803
DVU_0126
ABC transporter, ATP-binding protein; Identified by similarity to SP:P37624; match to protein family HMM PF00005.
  
  
 0.706
DVU_2145
Chloramphenicol acetyltransferase, putative; Identified by similarity to SP:P22616.
   
  
 0.702
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.672
DVU_3079
Identified by match to protein family HMM PF00903.
  
  
 0.603
DVU_0127
Membrane protein, putative; Identified by similarity to SP:P75774.
  
  
 0.596
DVU_2423
Transcriptional regulator, putative; Identified by match to protein family HMM PF01638.
  
  
 0.585
DVU_2210
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702.
  
  
 0.566
fadD
long-chain-fatty-acid--CoA ligase; Identified by similarity to SP:P94547; match to protein family HMM PF00501.
   
 
 0.563
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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