STRINGSTRING
DVU_2436 DVU_2436 DVU_1589 DVU_1589 DVU_1338 DVU_1338 DVU_0810 DVU_0810 DVU_2434 DVU_2434 DVU_2772 DVU_2772 DVU_2435 DVU_2435
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2436Conserved hypothetical protein; Identified by similarity to OMNI:AF1432. (210 aa)    
Predicted Functional Partners:
DVU_1589
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.672
DVU_1338
Conserved hypothetical protein; Identified by similarity to OMNI:SO3257.
      
 0.588
DVU_0810
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.494
DVU_2434
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.445
DVU_2772
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE2295.
   
   0.441
DVU_2435
Transporter, CorA family; Identified by similarity to SP:P27841; match to protein family HMM PF01544.
  
    0.431
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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