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DVU_2460 DVU_2460 DVU_2459 DVU_2459 rpoA rpoA rpoB rpoB gyrA gyrA DVU_2461 DVU_2461 DVU_3190 DVU_3190 DVU_2462 DVU_2462 DVU_1589 DVU_1589 rpoC rpoC DVU_2434 DVU_2434
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2460Hypothetical protein; Identified by Glimmer2; putative. (197 aa)    
Predicted Functional Partners:
DVU_2459
Hypothetical protein; Identified by Glimmer2; putative.
 
 
   0.975
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
   0.911
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
   0.864
gyrA
DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
  
   0.853
DVU_2461
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.
  
    0.766
DVU_3190
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.764
DVU_2462
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.
  
    0.760
DVU_1589
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.724
rpoC
DNA-directed RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
   0.710
DVU_2434
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.702
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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