Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_1160 | DVU_2470 | DVU_1160 | DVU_2470 | Urea transporter, putative; Urea channel that facilitates transmembrane urea transport down a concentration gradient; Belongs to the urea transporter family. | Membrane protein, putaive; Identified by similarity to SP:P75768; match to protein family HMM PF01027; Belongs to the BI1 family. | 0.705 |
DVU_1185 | DVU_2470 | DVU_1185 | DVU_2470 | Colicin V production family protein; Identified by match to protein family HMM PF02674. | Membrane protein, putaive; Identified by similarity to SP:P75768; match to protein family HMM PF01027; Belongs to the BI1 family. | 0.463 |
DVU_2470 | DVU_1160 | DVU_2470 | DVU_1160 | Membrane protein, putaive; Identified by similarity to SP:P75768; match to protein family HMM PF01027; Belongs to the BI1 family. | Urea transporter, putative; Urea channel that facilitates transmembrane urea transport down a concentration gradient; Belongs to the urea transporter family. | 0.705 |
DVU_2470 | DVU_1185 | DVU_2470 | DVU_1185 | Membrane protein, putaive; Identified by similarity to SP:P75768; match to protein family HMM PF01027; Belongs to the BI1 family. | Colicin V production family protein; Identified by match to protein family HMM PF02674. | 0.463 |
DVU_2470 | htpX | DVU_2470 | DVU_2494 | Membrane protein, putaive; Identified by similarity to SP:P75768; match to protein family HMM PF01027; Belongs to the BI1 family. | Peptidase, M48 family; Identified by match to protein family HMM PF01435; Belongs to the peptidase M48B family. | 0.624 |
DVU_2470 | msrB | DVU_2470 | DVU_0576 | Membrane protein, putaive; Identified by similarity to SP:P75768; match to protein family HMM PF01027; Belongs to the BI1 family. | Peptide methionine sulfoxide reductase MsrB; Identified by similarity to SP:P14930; match to protein family HMM PF01641; match to protein family HMM TIGR00357. | 0.486 |
htpX | DVU_2470 | DVU_2494 | DVU_2470 | Peptidase, M48 family; Identified by match to protein family HMM PF01435; Belongs to the peptidase M48B family. | Membrane protein, putaive; Identified by similarity to SP:P75768; match to protein family HMM PF01027; Belongs to the BI1 family. | 0.624 |
msrB | DVU_2470 | DVU_0576 | DVU_2470 | Peptide methionine sulfoxide reductase MsrB; Identified by similarity to SP:P14930; match to protein family HMM PF01641; match to protein family HMM TIGR00357. | Membrane protein, putaive; Identified by similarity to SP:P75768; match to protein family HMM PF01027; Belongs to the BI1 family. | 0.486 |