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DVU_2485 DVU_2485 DVU_2484 DVU_2484 cydB cydB DVU_2483 DVU_2483 DVU_3107 DVU_3107 fdnG-2 fdnG-2 DVU_0638 DVU_0638 DVU_2481 DVU_2481 putA putA DVU_1081 DVU_1081 DVU_2225 DVU_2225
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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[Homology]
Score
DVU_2485Membrane protein, putative. (354 aa)    
Predicted Functional Partners:
DVU_2484
Identified by match to protein family HMM PF00034.
 
  
 0.963
cydB
Cytochrome d ubiquinol oxidase, subunit II; Identified by similarity to SP:P94365; match to protein family HMM PF02322; match to protein family HMM TIGR00203.
  
 
 0.952
DVU_2483
Cytochrome c family protein; Identified by similarity to SP:P00135; match to protein family HMM PF02085.
 
    0.930
DVU_3107
Identified by match to protein family HMM PF00034.
 
  
 0.816
fdnG-2
Formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.714
DVU_0638
Membrane protein, putative; Identified by similarity to OMNI:CT0045.
  
    0.565
DVU_2481
Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175.
  
  
 0.500
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.497
DVU_1081
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
   
 0.493
DVU_2225
acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit.
 
     0.489
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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