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DVU_2493 DVU_2493 DVU_2484 DVU_2484 poR poR DVU_3107 DVU_3107 DVU_0624 DVU_0624 trpF-2 trpF-2 DVU_2012 DVU_2012 DVU_3041 DVU_3041 cyf cyf DVU_3292 DVU_3292 DVU_0665 DVU_0665
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2493Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (462 aa)    
Predicted Functional Partners:
DVU_2484
Identified by match to protein family HMM PF00034.
 
  
 0.739
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
 
 0.671
DVU_3107
Identified by match to protein family HMM PF00034.
 
  
 0.606
DVU_0624
NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family.
  
 
 0.569
trpF-2
N-(5'-phosphoribosyl)anthranilate isomerase; Identified by match to protein family HMM PF00697; Belongs to the TrpF family.
  
    0.535
DVU_2012
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.526
DVU_3041
Cytochrome c553; Identified by similarity to SP:P00120; match to protein family HMM PF00034.
 
  
 0.522
cyf
Cytochrome c-553; Natural electron acceptor for a formate dehydrogenase.
 
  
 0.515
DVU_3292
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070.
  
 
 0.507
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
  
  
 0.503
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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