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DVU_2545 DVU_2545 glgA glgA DVU_2546 DVU_2546 putA putA poR poR DVU_2825 DVU_2825 DVU_3294 DVU_3294 DVU_2483 DVU_2483 DVU_0665 DVU_0665 DVU_2271 DVU_2271 DVU_1404 DVU_1404
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2545Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465. (386 aa)    
Predicted Functional Partners:
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
  
 0.616
DVU_2546
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
    0.609
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
 
 
 0.600
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
     
 0.554
DVU_2825
Pyruvate formate-lyase 1 activating enzyme, putative; Identified by similarity to SP:P09374; similar to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055.
  
  
 0.515
DVU_3294
Aldehyde dehydrogenase (NADP) family protein; Identified by match to protein family HMM PF00171.
 
 
 0.487
DVU_2483
Cytochrome c family protein; Identified by similarity to SP:P00135; match to protein family HMM PF02085.
   
    0.468
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
  
  
 0.460
DVU_2271
Pyruvate formate-lyase activating enzyme, putative; Identified by similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055.
  
  
 0.438
DVU_1404
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
  
 0.433
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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