Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0172 | DVU_0686 | DVU_0172 | DVU_0686 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | 0.734 |
| DVU_0172 | DVU_2567 | DVU_0172 | DVU_2567 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BS2704; match to protein family HMM PF01978. | 0.467 |
| DVU_0172 | topA | DVU_0172 | DVU_3389 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.580 |
| DVU_0535 | DVU_0686 | DVU_0535 | DVU_0686 | Hmc operon protein 2; HMWC (high-molecular-weight cytochrome c precursor), ORF2, ORF3, ORF4, ORF5, ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates. ORF2 is a transmembrane redox protein. | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | 0.412 |
| DVU_0535 | DVU_2567 | DVU_0535 | DVU_2567 | Hmc operon protein 2; HMWC (high-molecular-weight cytochrome c precursor), ORF2, ORF3, ORF4, ORF5, ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates. ORF2 is a transmembrane redox protein. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BS2704; match to protein family HMM PF01978. | 0.475 |
| DVU_0535 | topA | DVU_0535 | DVU_3389 | Hmc operon protein 2; HMWC (high-molecular-weight cytochrome c precursor), ORF2, ORF3, ORF4, ORF5, ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates. ORF2 is a transmembrane redox protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.582 |
| DVU_0588 | DVU_0686 | DVU_0588 | DVU_0686 | Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175. | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | 0.580 |
| DVU_0588 | DVU_2567 | DVU_0588 | DVU_2567 | Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BS2704; match to protein family HMM PF01978. | 0.467 |
| DVU_0588 | DVU_2811 | DVU_0588 | DVU_2811 | Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175. | Formate dehydrogenase, beta subunit, putative; Beta chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The beta chain is an electron transfer unit. | 0.903 |
| DVU_0588 | qrcC | DVU_0588 | DVU_0693 | Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175. | Molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative; Component of the respiratory Qrc complex, that catalyzes the reduction of the menaquinone pool using electrons transferred from the reduced periplasmic cytochrome c3, and which is probably involved in sulfate respiration. Is likely essential for growth on H(2) or formate since the periplasmic hydrogenases and/or formate dehydrogenases act as primary electron donors for the Qrc complex. QrcC is an electron- transferring subunit; its cubane iron sulfur clusters form a pathway for electron transfer between the he [...] | 0.669 |
| DVU_0588 | topA | DVU_0588 | DVU_3389 | Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.580 |
| DVU_0686 | DVU_0172 | DVU_0686 | DVU_0172 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | 0.734 |
| DVU_0686 | DVU_0535 | DVU_0686 | DVU_0535 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | Hmc operon protein 2; HMWC (high-molecular-weight cytochrome c precursor), ORF2, ORF3, ORF4, ORF5, ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates. ORF2 is a transmembrane redox protein. | 0.412 |
| DVU_0686 | DVU_0588 | DVU_0686 | DVU_0588 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | Formate dehydrogenase, beta subunit, putative; Identified by similarity to SP:P32175. | 0.580 |
| DVU_0686 | DVU_2567 | DVU_0686 | DVU_2567 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BS2704; match to protein family HMM PF01978. | 0.467 |
| DVU_0686 | DVU_2811 | DVU_0686 | DVU_2811 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | Formate dehydrogenase, beta subunit, putative; Beta chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The beta chain is an electron transfer unit. | 0.584 |
| DVU_0686 | DVU_3143 | DVU_0686 | DVU_3143 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409. | 0.550 |
| DVU_0686 | qrcC | DVU_0686 | DVU_0693 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | Molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative; Component of the respiratory Qrc complex, that catalyzes the reduction of the menaquinone pool using electrons transferred from the reduced periplasmic cytochrome c3, and which is probably involved in sulfate respiration. Is likely essential for growth on H(2) or formate since the periplasmic hydrogenases and/or formate dehydrogenases act as primary electron donors for the Qrc complex. QrcC is an electron- transferring subunit; its cubane iron sulfur clusters form a pathway for electron transfer between the he [...] | 0.571 |
| DVU_0686 | topA | DVU_0686 | DVU_3389 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.580 |
| DVU_1724 | DVU_2567 | DVU_1724 | DVU_2567 | Phage uncharacterized protein, putative. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BS2704; match to protein family HMM PF01978. | 0.478 |
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