STRINGSTRING
DVU_2592 DVU_2592 DVU_2591 DVU_2591 DVU_0191 DVU_0191 DVU_0192 DVU_0192 DVU_2701 DVU_2701 DVU_2851 DVU_2851 DVU_2879 DVU_2879 DVU_2273 DVU_2273
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2592Hypothetical protein; Identified by Glimmer2; putative. (112 aa)    
Predicted Functional Partners:
DVU_2591
Tail fiber assembly protein, putative.
  
    0.961
DVU_0191
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
   
    0.802
DVU_0192
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
   
    0.751
DVU_2701
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.647
DVU_2851
Tail protein, putative; Identified by similarity to GP:19483757.
   
    0.647
DVU_2879
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
   
    0.544
DVU_2273
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.436
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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