STRINGSTRING
DVU_2620 DVU_2620 DVU_2619 DVU_2619 DVU_2580 DVU_2580 DVU_2621 DVU_2621 DVU_3163 DVU_3163 DVU_2618 DVU_2618
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2620Conserved hypothetical protein; Identified by similarity to OMNI:CC3039. (386 aa)    
Predicted Functional Partners:
DVU_2619
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311.
 
    0.638
DVU_2580
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
  
     0.426
DVU_2621
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.422
DVU_3163
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01LI0216; match to protein family HMM PF00528.
  
    0.406
DVU_2618
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.405
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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