STRINGSTRING
DVU_2624 DVU_2624 DVU_2623 DVU_2623 DVU_2723 DVU_2723 DVU_0215 DVU_0215 DVU_2854 DVU_2854 DVU_2169 DVU_2169 DVU_0199 DVU_0199 DVU_2870 DVU_2870
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2624Hypothetical protein; Identified by Glimmer2; putative. (165 aa)    
Predicted Functional Partners:
DVU_2623
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.630
DVU_2723
Tail protein, putative; Identified by similarity to SP:P08558.
  
    0.508
DVU_0215
Tail protein, putative; Identified by similarity to SP:P08558.
  
    0.462
DVU_2854
Tail protein, putative; Identified by similarity to SP:P08558.
  
    0.452
DVU_2169
Conserved hypothetical protein; Identified by similarity to GP:311850.
  
    0.445
DVU_0199
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
    0.426
DVU_2870
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
    0.420
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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