STRINGSTRING
DVU_2633 DVU_2633 DVU_2634 DVU_2634 DVU_1724 DVU_1724 DVU_2611 DVU_2611 DVU_2604 DVU_2604 DVU_1721 DVU_1721 DVU_2688 DVU_2688 DVU_1100 DVU_1100 DVU_2695 DVU_2695
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2633Transcriptional regulator, putative; Identified by similarity to SP:Q06553; match to protein family HMM PF00717. (257 aa)    
Predicted Functional Partners:
DVU_2634
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.654
DVU_1724
Phage uncharacterized protein, putative.
  
     0.609
DVU_2611
Conserved hypothetical protein.
  
     0.607
DVU_2604
Conserved hypothetical protein; Identified by similarity to GP:13186164.
 
     0.505
DVU_1721
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.427
DVU_2688
Identified by similarity to SP:P07636; match to protein family HMM PF00665.
 
     0.421
DVU_1100
Tail fiber protein, putative.
  
    0.413
DVU_2695
Conserved hypothetical protein.
 
     0.406
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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