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DVU_2636 DVU_2636 DVU_1017 DVU_1017 DVU_2815 DVU_2815 DVU_3246 DVU_3246 DVU_3097 DVU_3097 DVU_0062 DVU_0062 DVU_1013 DVU_1013 DVU_2437 DVU_2437 DVU_2637 DVU_2637 DVU_1895 DVU_1895 DVU_3212 DVU_3212
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2636Hypothetical protein; Identified by Glimmer2; putative. (389 aa)    
Predicted Functional Partners:
DVU_1017
ABC transporter, ATP-binding protein/permease protein; Identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664.
  
 
 0.828
DVU_2815
Outer membrane efflux protein; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
 
 0.732
DVU_3246
RND efflux system, outer membrane protein, NodT family; Identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
 
 0.732
DVU_3097
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
 
 0.729
DVU_0062
RND efflux system, outer membrane protein, NodT family; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
 
 0.727
DVU_1013
Type I secretion outer membrane protein, TolC family; Identified by similarity to GP:150976; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 
 0.727
DVU_2437
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01TE1382; match to protein family HMM PF02687.
  
  
 0.696
DVU_2637
HAMP domain protein; Identified by match to protein family HMM PF00672.
  
    0.599
DVU_1895
Major facilitator superfamily protein; Identified by similarity to OMNI:NTL02MA0180; match to protein family HMM PF00083.
  
 
 0.566
DVU_3212
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852.
  
    0.476
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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