Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
DVU_0081 | DVU_2546 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.485 |
DVU_0081 | DVU_2637 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | HAMP domain protein; Identified by match to protein family HMM PF00672. | 0.675 |
DVU_0717 | DVU_2637 | GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00254. | HAMP domain protein; Identified by match to protein family HMM PF00672. | 0.536 |
DVU_0737 | DVU_2637 | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | HAMP domain protein; Identified by match to protein family HMM PF00672. | 0.447 |
DVU_2546 | DVU_0081 | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.485 |
DVU_2546 | DVU_2637 | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | HAMP domain protein; Identified by match to protein family HMM PF00672. | 0.572 |
DVU_2636 | DVU_2637 | Hypothetical protein; Identified by Glimmer2; putative. | HAMP domain protein; Identified by match to protein family HMM PF00672. | 0.599 |
DVU_2637 | DVU_0081 | HAMP domain protein; Identified by match to protein family HMM PF00672. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.675 |
DVU_2637 | DVU_0717 | HAMP domain protein; Identified by match to protein family HMM PF00672. | GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00254. | 0.536 |
DVU_2637 | DVU_0737 | HAMP domain protein; Identified by match to protein family HMM PF00672. | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.447 |
DVU_2637 | DVU_2546 | HAMP domain protein; Identified by match to protein family HMM PF00672. | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.572 |
DVU_2637 | DVU_2636 | HAMP domain protein; Identified by match to protein family HMM PF00672. | Hypothetical protein; Identified by Glimmer2; putative. | 0.599 |
DVU_2637 | DVU_2638 | HAMP domain protein; Identified by match to protein family HMM PF00672. | Conserved domain protein. | 0.408 |
DVU_2638 | DVU_2637 | Conserved domain protein. | HAMP domain protein; Identified by match to protein family HMM PF00672. | 0.408 |