STRINGSTRING
DVU_2646 DVU_2646 DVU_0171 DVU_0171 DVU_2647 DVU_2647 DVU_2645 DVU_2645 DVU_2644 DVU_2644 DVU_2649 DVU_2649 DVU_2648 DVU_2648
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_26461-aminocyclopropane-1-carboxylate deaminase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01275. (332 aa)    
Predicted Functional Partners:
DVU_0171
Hemolysin-related protein; Identified by similarity to GP:1019859; match to protein family HMM PF00155.
  
 
  0.908
DVU_2647
Endoribonuclease, L-PSP family; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.
  
    0.696
DVU_2645
Na+/H+ antiporter family protein; Identified by similarity to SP:P27611.
  
    0.647
DVU_2644
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
    0.511
DVU_2649
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.477
DVU_2648
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.466
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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