Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_2688 | DVU_2689 | DVU_2688 | DVU_2689 | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | Bacteriophage DNA transposition B protein; Identified by similarity to SP:P03763. | 0.985 |
DVU_2688 | DVU_2690 | DVU_2688 | DVU_2690 | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | Hypothetical protein; Identified by Glimmer2; putative. | 0.800 |
DVU_2688 | DVU_2691 | DVU_2688 | DVU_2691 | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | Hypothetical protein; Identified by Glimmer2; putative. | 0.569 |
DVU_2688 | DVU_2692 | DVU_2688 | DVU_2692 | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | Conserved domain protein. | 0.596 |
DVU_2688 | DVU_2695 | DVU_2688 | DVU_2695 | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | Conserved hypothetical protein. | 0.847 |
DVU_2688 | DVU_2704 | DVU_2688 | DVU_2704 | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | Conserved hypothetical protein; Identified by similarity to OMNI:NMB1092. | 0.404 |
DVU_2688 | DVU_2715 | DVU_2688 | DVU_2715 | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | Conserved hypothetical protein; Identified by similarity to OMNI:NMB1103. | 0.609 |
DVU_2688 | amiE | DVU_2688 | DVU_1164 | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | Aliphatic amidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family. | 0.647 |
DVU_2689 | DVU_2688 | DVU_2689 | DVU_2688 | Bacteriophage DNA transposition B protein; Identified by similarity to SP:P03763. | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | 0.985 |
DVU_2689 | DVU_2690 | DVU_2689 | DVU_2690 | Bacteriophage DNA transposition B protein; Identified by similarity to SP:P03763. | Hypothetical protein; Identified by Glimmer2; putative. | 0.801 |
DVU_2689 | DVU_2691 | DVU_2689 | DVU_2691 | Bacteriophage DNA transposition B protein; Identified by similarity to SP:P03763. | Hypothetical protein; Identified by Glimmer2; putative. | 0.569 |
DVU_2689 | DVU_2692 | DVU_2689 | DVU_2692 | Bacteriophage DNA transposition B protein; Identified by similarity to SP:P03763. | Conserved domain protein. | 0.568 |
DVU_2689 | DVU_2695 | DVU_2689 | DVU_2695 | Bacteriophage DNA transposition B protein; Identified by similarity to SP:P03763. | Conserved hypothetical protein. | 0.851 |
DVU_2690 | DVU_2688 | DVU_2690 | DVU_2688 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | 0.800 |
DVU_2690 | DVU_2689 | DVU_2690 | DVU_2689 | Hypothetical protein; Identified by Glimmer2; putative. | Bacteriophage DNA transposition B protein; Identified by similarity to SP:P03763. | 0.801 |
DVU_2690 | DVU_2691 | DVU_2690 | DVU_2691 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.461 |
DVU_2690 | DVU_2692 | DVU_2690 | DVU_2692 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved domain protein. | 0.446 |
DVU_2690 | DVU_2695 | DVU_2690 | DVU_2695 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein. | 0.480 |
DVU_2691 | DVU_2688 | DVU_2691 | DVU_2688 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by similarity to SP:P07636; match to protein family HMM PF00665. | 0.569 |
DVU_2691 | DVU_2689 | DVU_2691 | DVU_2689 | Hypothetical protein; Identified by Glimmer2; putative. | Bacteriophage DNA transposition B protein; Identified by similarity to SP:P03763. | 0.569 |
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