STRINGSTRING
DVU_2736 DVU_2736 DVU_0810 DVU_0810 DVU_0843 DVU_0843 DVU_1682 DVU_1682 DVU_3190 DVU_3190 DVU_1039 DVU_1039 DVU_2062 DVU_2062 ccmE ccmE DVU_0907 DVU_0907 DVU_2063 DVU_2063 DVU_2555 DVU_2555
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2736Hypothetical protein; Identified by Glimmer2; putative. (169 aa)    
Predicted Functional Partners:
DVU_0810
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.695
DVU_0843
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.694
DVU_1682
GAF domain protein; Identified by match to protein family HMM PF01590.
  
     0.658
DVU_3190
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.631
DVU_1039
Lipoprotein, putative.
  
     0.629
DVU_2062
ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580.
  
     0.616
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
     0.570
DVU_0907
Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443.
  
     0.569
DVU_2063
Conserved hypothetical protein; Identified by similarity to GP:29338363.
 
    0.569
DVU_2555
MATE efflux family protein; Identified by similarity to OMNI:NTL01RSA1213; match to protein family HMM PF01554; match to protein family HMM TIGR00797.
  
    0.565
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.