STRINGSTRING
DVU_2787 DVU_2787 DVU_2788 DVU_2788 DVU_1606 DVU_1606 DVU_2786 DVU_2786 DVU_2785 DVU_2785 DVU_0375 DVU_0375 DVU_2783 DVU_2783 DVU_3015 DVU_3015 DVU_1891 DVU_1891
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2787Conserved domain protein; Identified by similarity to OMNI:NTL01NS2107. (152 aa)    
Predicted Functional Partners:
DVU_2788
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
  
    0.735
DVU_1606
Potassium uptake protein, TrkA family; Identified by similarity to OMNI:NTL01SS00580; match to protein family HMM PF02080; match to protein family HMM PF02254.
 
     0.625
DVU_2786
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.484
DVU_2785
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
    0.477
DVU_0375
Identified by match to protein family HMM PF00208.
  
    0.460
DVU_2783
Membrane protein, putative; Identified by match to protein family HMM PF01925.
 
    0.455
DVU_3015
Conserved domain protein; Identified by similarity to OMNI:NT01MC1323.
  
    0.421
DVU_1891
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS1759; match to protein family HMM PF05143.
  
     0.407
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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