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rnfE rnfE rnfD rnfD rnfG rnfG DVU_2792 DVU_2792 rnfB rnfB rnfA rnfA nth nth DVU_2798 DVU_2798 poR poR DVU_0429 DVU_0429 DVU_0498 DVU_0498
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rnfEElectron transport complex protein RnfE, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (223 aa)    
Predicted Functional Partners:
rnfD
Electron transport complex protein RnfD, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
 
 0.999
rnfG
Electron transport complex protein RnfG, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.
 
 
 0.999
DVU_2792
Electron transport complex protein RnfC, putative; Identified by similarity to SP:P77611; match to protein family HMM PF00037.
 
 
 0.994
rnfB
Iron-sulfur cluster-binding protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
 
 0.992
rnfA
Electron transport complex protein RnfA, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
 
 
0.991
nth
Endonuclease III, putative; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
 
  
 0.965
DVU_2798
ApbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
  
 0.920
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
   
 
 0.875
DVU_0429
Ech hydrogenase, subunit EchF, putative; Identified by similarity to GP:3005972; match to protein family HMM PF00037.
  
 
 0.664
DVU_0498
Iron-sulfur cluster-binding protein, putative; Identified by similarity to OMNI:AF1263; match to protein family HMM PF00037.
   
 
 0.640
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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