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DVU_2800 DVU_2800 DVU_2324 DVU_2324 merP merP DVU_2799 DVU_2799 DVU_0987 DVU_0987 DVU_2006 DVU_2006 poR poR DVU_2788 DVU_2788 DVU_2801 DVU_2801 ribD ribD DVU_0606 DVU_0606
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_2800Heavy metal translocating P-type ATPase; Identified by similarity to SP:P77894; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525. (633 aa)    
Predicted Functional Partners:
DVU_2324
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
 
 
0.833
merP
Mercuric transport protein periplasmic component; Identified by similarity to SP:P04131; match to protein family HMM PF00403.
  
 
 0.803
DVU_2799
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
  
 0.784
DVU_0987
Heavy metal-binding domain protein; Identified by match to protein family HMM PF00403.
  
 
 0.780
DVU_2006
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.780
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
  
 0.522
DVU_2788
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
 
  
 0.515
DVU_2801
Hypothetical protein; Identified by Glimmer2; putative.
       0.505
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.481
DVU_0606
Transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family; Identified by match to protein family HMM PF01022; match to protein family HMM PF01209.
  
  
 0.451
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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