DVU_2823 protein (Desulfovibrio vulgaris Hildenborough)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

DVU_2823

TRAP transporter, DctMQ subunit; Identified by similarity to GP:12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786. (591 aa)

Predicted Functional Partners:

DVU_2822

0.992

dctP

0.980

DVU_0011

0.976

DVU_0010

0.925

DVU_2824

0.807

DVU_0706

0.754

dctM

0.726

DVU_0009

0.719

DVU_2820

0.630

DVU_2827

0.577

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0009	DVU_0010	DVU_0009	DVU_0010	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.985
DVU_0009	DVU_0011	DVU_0009	DVU_0011	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.980
DVU_0009	DVU_0706	DVU_0009	DVU_0706	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.820
DVU_0009	DVU_2822	DVU_0009	DVU_2822	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.957
DVU_0009	DVU_2823	DVU_0009	DVU_2823	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	TRAP transporter, DctMQ subunit; Identified by similarity to GP:12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786.	0.719
DVU_0009	dctP	DVU_0009	DVU_0707	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.964
DVU_0010	DVU_0009	DVU_0010	DVU_0009	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	0.985
DVU_0010	DVU_0011	DVU_0010	DVU_0011	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.952
DVU_0010	DVU_2822	DVU_0010	DVU_2822	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.883
DVU_0010	DVU_2823	DVU_0010	DVU_2823	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter, DctMQ subunit; Identified by similarity to GP:12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786.	0.925
DVU_0010	dctM	DVU_0010	DVU_0705	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	0.941
DVU_0010	dctP	DVU_0010	DVU_0707	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.883
DVU_0011	DVU_0009	DVU_0011	DVU_0009	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	0.980
DVU_0011	DVU_0010	DVU_0011	DVU_0010	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.952
DVU_0011	DVU_0706	DVU_0011	DVU_0706	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.814
DVU_0011	DVU_2823	DVU_0011	DVU_2823	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	TRAP transporter, DctMQ subunit; Identified by similarity to GP:12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786.	0.976
DVU_0011	dctM	DVU_0011	DVU_0705	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	0.954
DVU_0706	DVU_0009	DVU_0706	DVU_0009	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786.	0.820
DVU_0706	DVU_0011	DVU_0706	DVU_0011	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.814
DVU_0706	DVU_2822	DVU_0706	DVU_2822	TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.	0.695

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