STRINGSTRING
DVU_2871 DVU_2871 DVU_2872 DVU_2872 DVU_2869 DVU_2869 DVU_2867 DVU_2867 DVU_2870 DVU_2870 DVU_2873 DVU_2873 DVU_2868 DVU_2868 DVU_2866 DVU_2866 DVU_2865 DVU_2865 DVU_2859 DVU_2859 DVU_2861 DVU_2861
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2871Identified by match to protein family HMM PF01343. (439 aa)    
Predicted Functional Partners:
DVU_2872
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
    0.892
DVU_2869
Major head protein; Identified by match to protein family HMM PF03864.
 
    0.867
DVU_2867
Holin; Identified by match to protein family HMM TIGR01593.
  
    0.784
DVU_2870
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
       0.780
DVU_2873
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.780
DVU_2868
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.774
DVU_2866
Conserved hypothetical protein; Identified by similarity to GP:6714967; match to protein family HMM PF05838.
  
    0.722
DVU_2865
Lipoprotein, putative.
  
    0.687
DVU_2859
Tail sheath protein, putative; Identified by similarity to SP:P79678.
 
    0.670
DVU_2861
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.669
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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