STRINGSTRING
DVU_2875 DVU_2875 DVU_2874 DVU_2874 DVU_2876 DVU_2876 DVU_2878 DVU_2878 DVU_1781 DVU_1781 DVU_2877 DVU_2877 DVU_3032 DVU_3032 DVU_2784 DVU_2784 DVU_2871 DVU_2871 DVU_2873 DVU_2873 DVU_2870 DVU_2870
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_2875DNA-binding domain, excisionase family; Identified by match to protein family HMM TIGR01764. (72 aa)    
Predicted Functional Partners:
DVU_2874
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.923
DVU_2876
Terminase, large subunit, putative; Identified by similarity to GP:13361094.
  
    0.794
DVU_2878
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
  
    0.611
DVU_1781
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01533; match to protein family HMM PF02589.
      
 0.567
DVU_2877
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.566
DVU_3032
Conserved hypothetical protein; Identified by similarity to OMNI:HP0137; match to protein family HMM PF02589.
      
 0.557
DVU_2784
Dehydrogenase, FMN-dependent family; Identified by match to protein family HMM PF01070.
      
 0.551
DVU_2871
Identified by match to protein family HMM PF01343.
  
    0.445
DVU_2873
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.445
DVU_2870
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
    0.441
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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