Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_2884 | DVU_2885 | DVU_2884 | DVU_2885 | Peptidase, M18 family; Identified by match to protein family HMM PF02127. | Alcohol dehydrogenase, iron-containing; Identified by similarity to GP:155577; match to protein family HMM PF00465. | 0.514 |
DVU_2884 | folC | DVU_2884 | DVU_2882 | Peptidase, M18 family; Identified by match to protein family HMM PF02127. | Folylpolyglutamate synthase; Identified by similarity to SP:P15925; match to protein family HMM TIGR01499. | 0.542 |
DVU_2884 | selA | DVU_2884 | DVU_2883 | Peptidase, M18 family; Identified by match to protein family HMM PF02127. | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.651 |
DVU_2885 | DVU_2884 | DVU_2885 | DVU_2884 | Alcohol dehydrogenase, iron-containing; Identified by similarity to GP:155577; match to protein family HMM PF00465. | Peptidase, M18 family; Identified by match to protein family HMM PF02127. | 0.514 |
folC | DVU_2884 | DVU_2882 | DVU_2884 | Folylpolyglutamate synthase; Identified by similarity to SP:P15925; match to protein family HMM TIGR01499. | Peptidase, M18 family; Identified by match to protein family HMM PF02127. | 0.542 |
folC | selA | DVU_2882 | DVU_2883 | Folylpolyglutamate synthase; Identified by similarity to SP:P15925; match to protein family HMM TIGR01499. | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.529 |
selA | DVU_2884 | DVU_2883 | DVU_2884 | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | Peptidase, M18 family; Identified by match to protein family HMM PF02127. | 0.651 |
selA | folC | DVU_2883 | DVU_2882 | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | Folylpolyglutamate synthase; Identified by similarity to SP:P15925; match to protein family HMM TIGR01499. | 0.529 |