STRINGSTRING
DVU_2890 DVU_2890 nikR nikR folE2 folE2 DVU_2888 DVU_2888 DVU_2893 DVU_2893 DVU_2889 DVU_2889 DVU_1160 DVU_1160 rnpA rnpA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_2890Conserved domain protein. (292 aa)    
Predicted Functional Partners:
nikR
Nickel responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
  
    0.769
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
    0.730
DVU_2888
Cobalt ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:Q05596; match to protein family HMM PF00005.
     
 0.588
DVU_2893
Flagellar basal-body rod protein, putative; Identified by similarity to SP:P75935; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family.
       0.581
DVU_2889
Identified by match to protein family HMM PF02632.
       0.568
DVU_1160
Urea transporter, putative; Urea channel that facilitates transmembrane urea transport down a concentration gradient; Belongs to the urea transporter family.
  
     0.448
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
    0.408
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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