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DVU_2905 DVU_2905 DVU_2396 DVU_2396 DVU_2885 DVU_2885 DVU_2932 DVU_2932 DVU_0082 DVU_0082 DVU_1456 DVU_1456 poR poR qor qor umuC umuC DVU_2753 DVU_2753
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
DVU_2905Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:Q04944; match to protein family HMM PF00465. (392 aa)    
Predicted Functional Partners:
DVU_2396
Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:P31005; match to protein family HMM PF00465.
  
 
0.931
DVU_2885
Alcohol dehydrogenase, iron-containing; Identified by similarity to GP:155577; match to protein family HMM PF00465.
  
 
0.929
DVU_2932
Conserved hypothetical protein TIGR01777; Identified by similarity to OMNI:NTL03ST2282; match to protein family HMM TIGR01777.
   
    0.536
DVU_0082
Conserved hypothetical protein; Identified by similarity to GP:12543284.
  
  
 0.487
DVU_1456
Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
    
   0.461
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
  
 0.450
qor
Quinone oxidoreductase; Identified by similarity to SP:P28304; match to protein family HMM PF00107.
  
  
 0.446
umuC
umuC protein; Identified by similarity to SP:P04152; match to protein family HMM PF00817.
  
    0.424
DVU_2753
Identified by match to protein family HMM TIGR01909.
  
    0.415
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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