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DVU_2932 DVU_2932 DVU_0082 DVU_0082 DVU_2933 DVU_2933 DVU_2934 DVU_2934 DVU_2931 DVU_2931 DVU_2930 DVU_2930 DVU_0079 DVU_0079 DVU_2690 DVU_2690 DVU_2201 DVU_2201 DVU_2905 DVU_2905 DVU_0391 DVU_0391
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2932Conserved hypothetical protein TIGR01777; Identified by similarity to OMNI:NTL03ST2282; match to protein family HMM TIGR01777. (308 aa)    
Predicted Functional Partners:
DVU_0082
Conserved hypothetical protein; Identified by similarity to GP:12543284.
 
    0.824
DVU_2933
Response regulator/sensory box/HDIG domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277.
  
    0.765
DVU_2934
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
       0.758
DVU_2931
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR01369.
  
    0.676
DVU_2930
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.648
DVU_0079
ZIP zinc transporter family protein; Identified by similarity to SP:Q06916; match to protein family HMM PF02535.
  
    0.637
DVU_2690
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.587
DVU_2201
Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:Q24857; match to protein family HMM PF00465.
   
    0.536
DVU_2905
Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:Q04944; match to protein family HMM PF00465.
   
    0.536
DVU_0391
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.535
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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