STRINGSTRING
DVU_2957 DVU_2957 DVU_2958 DVU_2958 DVU_2959 DVU_2959 DVU_2960 DVU_2960 DVU_2956 DVU_2956 DVU_2967 DVU_2967 DVU_2963 DVU_2963 DVU_2961 DVU_2961 DVU_2964 DVU_2964 DVU_2962 DVU_2962 DVU_2955 DVU_2955
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2957Hypothetical protein; Identified by Glimmer2; putative. (46 aa)    
Predicted Functional Partners:
DVU_2958
Membrane protein, putative; Identified by match to protein family HMM PF01925.
  
    0.782
DVU_2959
Conserved hypothetical protein; Identified by similarity to SP:O28710.
  
    0.766
DVU_2960
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.
  
  
 0.766
DVU_2956
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
  
  
 0.706
DVU_2967
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
  
 0.651
DVU_2963
Response regulator; Identified by match to protein family HMM PF00072.
  
    0.548
DVU_2961
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.540
DVU_2964
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.539
DVU_2962
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
    0.538
DVU_2955
Hypothetical protein; Identified by Glimmer2; putative.
       0.409
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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