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DVU_2958 DVU_2958 DVU_2959 DVU_2959 DVU_2956 DVU_2956 DVU_2957 DVU_2957 DVU_0595 DVU_0595 DVU_1999 DVU_1999 DVU_2306 DVU_2306 glnN glnN DVU_2963 DVU_2963 DVU_2960 DVU_2960 DVU_2961 DVU_2961
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_2958Membrane protein, putative; Identified by match to protein family HMM PF01925. (332 aa)    
Predicted Functional Partners:
DVU_2959
Conserved hypothetical protein; Identified by similarity to SP:O28710.
  
    0.814
DVU_2956
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
  
  
 0.800
DVU_2957
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.782
DVU_0595
Conserved hypothetical protein; Identified by similarity to OMNI:AF0913.
 
  
 0.752
DVU_1999
Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.
   
  
 0.716
DVU_2306
Identified by similarity to GP:15026158; match to protein family HMM PF01384.
     
 0.711
glnN
Glutamine synthetase, type III; Identified by similarity to GP:9651982; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
      
 0.702
DVU_2963
Response regulator; Identified by match to protein family HMM PF00072.
  
    0.647
DVU_2960
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.
  
    0.638
DVU_2961
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.603
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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