STRINGSTRING
DVU_2961 DVU_2961 DVU_2962 DVU_2962 DVU_2960 DVU_2960 DVU_2964 DVU_2964 DVU_2963 DVU_2963 DVU_0665 DVU_0665 DVU_2958 DVU_2958 DVU_2959 DVU_2959 DVU_2957 DVU_2957 DVU_2965 DVU_2965 modB modB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2961Hypothetical protein; Identified by Glimmer2; putative. (115 aa)    
Predicted Functional Partners:
DVU_2962
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
    0.882
DVU_2960
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.
  
    0.839
DVU_2964
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.818
DVU_2963
Response regulator; Identified by match to protein family HMM PF00072.
  
  
 0.813
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
  
  
 0.633
DVU_2958
Membrane protein, putative; Identified by match to protein family HMM PF01925.
  
  
 0.603
DVU_2959
Conserved hypothetical protein; Identified by similarity to SP:O28710.
  
    0.603
DVU_2957
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.540
DVU_2965
Hypothetical protein; Identified by Glimmer2; putative.
       0.503
modB
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
  
 0.443
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.