DVU_2965 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_2965

Hypothetical protein; Identified by Glimmer2; putative. (99 aa)

Predicted Functional Partners:

DVU_2960

0.503

DVU_2961

0.503

DVU_2962

0.503

DVU_2963

0.503

DVU_2964

0.503

DVU_2966

0.468

DVU_2967

0.442

cheY-3

0.418

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_2960	DVU_2961	DVU_2960	DVU_2961	Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.	Hypothetical protein; Identified by Glimmer2; putative.	0.839
DVU_2960	DVU_2962	DVU_2960	DVU_2962	Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.909
DVU_2960	DVU_2963	DVU_2960	DVU_2963	Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.	Response regulator; Identified by match to protein family HMM PF00072.	0.793
DVU_2960	DVU_2964	DVU_2960	DVU_2964	Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.	Hypothetical protein; Identified by Glimmer2; putative.	0.794
DVU_2960	DVU_2965	DVU_2960	DVU_2965	Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.	Hypothetical protein; Identified by Glimmer2; putative.	0.503
DVU_2960	DVU_2967	DVU_2960	DVU_2967	Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.657
DVU_2961	DVU_2960	DVU_2961	DVU_2960	Hypothetical protein; Identified by Glimmer2; putative.	Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.	0.839
DVU_2961	DVU_2962	DVU_2961	DVU_2962	Hypothetical protein; Identified by Glimmer2; putative.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.882
DVU_2961	DVU_2963	DVU_2961	DVU_2963	Hypothetical protein; Identified by Glimmer2; putative.	Response regulator; Identified by match to protein family HMM PF00072.	0.813
DVU_2961	DVU_2964	DVU_2961	DVU_2964	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.818
DVU_2961	DVU_2965	DVU_2961	DVU_2965	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.503
DVU_2962	DVU_2960	DVU_2962	DVU_2960	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.	0.909
DVU_2962	DVU_2961	DVU_2962	DVU_2961	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Hypothetical protein; Identified by Glimmer2; putative.	0.882
DVU_2962	DVU_2963	DVU_2962	DVU_2963	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Response regulator; Identified by match to protein family HMM PF00072.	0.980
DVU_2962	DVU_2964	DVU_2962	DVU_2964	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Hypothetical protein; Identified by Glimmer2; putative.	0.950
DVU_2962	DVU_2965	DVU_2962	DVU_2965	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Hypothetical protein; Identified by Glimmer2; putative.	0.503
DVU_2962	DVU_2966	DVU_2962	DVU_2966	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Response regulator; Identified by match to protein family HMM PF00072.	0.855
DVU_2962	DVU_2967	DVU_2962	DVU_2967	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.520
DVU_2962	cheY-3	DVU_2962	DVU_3228	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Chemotaxis protein CheY; Identified by similarity to SP:Q51455; match to protein family HMM PF00072.	0.400
DVU_2963	DVU_2960	DVU_2963	DVU_2960	Response regulator; Identified by match to protein family HMM PF00072.	Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199.	0.793

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About